nips nips2000 nips2000-125 nips2000-125-reference knowledge-graph by maker-knowledge-mining

125 nips-2000-Stability and Noise in Biochemical Switches


Source: pdf

Author: William Bialek

Abstract: Many processes in biology, from the regulation of gene expression in bacteria to memory in the brain, involve switches constructed from networks of biochemical reactions. Crucial molecules are present in small numbers, raising questions about noise and stability. Analysis of noise in simple reaction schemes indicates that switches stable for years and switchable in milliseconds can be built from fewer than one hundred molecules. Prospects for direct tests of this prediction, as well as implications, are discussed. 1


reference text

1. J. M. W. Slack, Fmm Egg to Embryo: Determinative Events in Early Development (Cambridge University Press, Cambridge, 1983); P. A. Lawrence, The Making of a Fly: The Genetics of Animal Design (Blackwell Science, Oxford, 1992). 2. M. Ptashne, A Genetic Switch: Phage ..\ and Higher Organisms, 2nd Edition (Blackwell, Cambridge MA, 1992); A. D. Johnson, A. R. Poteete, G. Lauer, R. T. Sauer, G. K. Ackers, and M. Ptashne, Nature 294, 217-223 (1981). 3. A. W. Murray, Nature 359, 599-604 (1992). 4. S. G. Miller and M. B. Kennedy, Cell 44, 861- 870 (1986); M. B. Kennedy, Ann. Rev. Biochem. 63, 571- 600 (1994). 5. E. Schrodinger, What is Life? (Cambridge University Press, Cambridge, 1944). 6. H. H. McAdams and A. Arkin, Ann. Rev. Biophys. Biomol. Struct. 27, 199-224 (1998); U. S. Bhalla and R. Iyengar, Science 283,381-387 (1999). 7. J. E. Lisman, Pmc. Nat. Acad. Sci. (USA) 82, 3055- 3057 (1985). 8. J. E. Lisman and M. A. Goldring, Pmc. Nat. Acad. Sci. (USA) 85, 5320- 5324 (1988). 9. N. Barkai and S. Leibler, Nature 387, 913-917 (1997). 10. J. Zinn-Justin, Quantum Field Theory and Critical Phenomena (Clarendon Press, Oxford, 1989). 11. H. H. McAdams and A. Arkin, Trends Genet. 15,65- 69 (1999). 12. F. Baras, M. Malek Mansour and J. E. Pearson, J. Chem. Phys. 105, 8257- 8261 (1996). 13. M. 1. Dykman, E. Mori, J. Ross, and P. M. Hunt, J. Chem. Phys. 100, 5735-5750 (1994). 14. S. Coleman, Aspects of Symmetry (Cambridge University Press, Cambridge, 1975). 15. H. P. Lu, L. Xun, and X. S. Xie, Science 282, 1877- 1882 (1998); T. Ha, A. Y. Ting, J. Liang, W. B. Caldwell, A. A. Deniz , D. S. Chemla, P. G. Schultz, and S. Weiss, Pmc. Nat. Acad. Sci. (USA) 96, 893- 898 (1999). 16. G. V. Shivashankar, S. Liu & A. J. Libchaber, Appl. Phys. Lett. 76, 3638-3640 (2000). 17. F. Rieke and D. A. Baylor, Revs. Mod. Phys. 70, 1027-1036 (1998).